If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ), 'gf_id' => 'HOM05D000618', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000618' ), 'data_identifier' => 'HOM05D000618', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000618', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '925', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31860' => 'bna', 'A02p42320' => 'bna', 'A06p10230' => 'bna', 'A06p20090' => 'bna', 'A06p27230' => 'bna', 'A06p29170' => 'bna', 'A06p43360' => 'bna', 'A06p44520' => 'bna', 'A07p19570' => 'bna', 'A08p37640' => 'bna', 'A09p01530' => 'bna', 'A09p62290' => 'bna', 'A10p01320' => 'bna', 'Aa31LG11G1180' => 'aar', 'Aa31LG1G800' => 'aar', 'Aa31LG1G9930' => 'aar', 'Aa31LG2G7380' => 'aar', 'Aa31LG2G8630' => 'aar', 'Aa31LG4G16340' => 'aar', 'Aa31LG5G1710' => 'aar', 'Aa31LG9G17270' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2190' => 'aag', 'Actinidia04103' => 'ach', 'Actinidia04710' => 'ach', 'Actinidia04887' => 'ach', 'Actinidia15916' => 'ach', 'Actinidia27627' => 'ach', 'Actinidia28404' => 'ach', 'Actinidia31984' => 'ach', 'Actinidia33197' => 'ach', 'Actinidia33609' => 'ach', 'Actinidia34999' => 'ach', 'Actinidia36008' => 'ach', 'Actinidia36355' => 'ach', 'Actinidia36356' => 'ach', 'Actinidia37627' => 'ach', 'Actinidia38775' => 'ach', 'Ah.02g112240' => 'amhyb', 'Ah.02g113520' => 'amhyb', 'Ah.02g128050' => 'amhyb', 'Ah.03g135060' => 'amhyb', 'Ah.03g138580' => 'amhyb', 'Ah.11g048380' => 'amhyb', 'Ah.13g073550' => 'amhyb', 'AL1G11930' => 'aly', 'AL1G26140' => 'aly', 'AL5G10230' => 'aly', 'AL5G12580' => 'aly', 'AL5G26790' => 'aly', 'AL7G52870' => 'aly', 'AL8G39350' => 'aly', 'Aqoxy3G00163' => 'aox', 'Aqoxy3G00637' => 'aox', 'Aqoxy3G03383' => 'aox', 'Aqoxy3G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V8IX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SGZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C222Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EG4FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LYJ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98UM0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD8YIG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXKJ1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER1SE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F69QA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGG2CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WI5JT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPKF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC3NNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XFR423' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ6HK5' => 'arhy', 'AT1G02610' => 'ath', 'AT1G14260' => 'ath', 'AT2G01275' => 'ath', 'AT2G02960' => 'ath', 'AT3G47550' => 'ath', 'AT4G02075' => 'ath', 'AT5G38070' => 'ath', 'AT5G62460' => 'ath', 'ATR0326G063' => 'atr', 'ATR0564G463' => 'atr', 'ATR0743G206' => 'atr', 'Atru.chr1.1731' => 'acertr', 'Atru.chr1.1741' => 'acertr', 'Atru.chr11.1783' => 'acertr', 'Atru.chr11.366' => 'acertr', 'Atru.chr4.1417' => 'acertr', 'Atru.chr5.1016' => 'acertr', 'Atru.chr9.226' => 'acertr', 'AUR62002391' => 'cqu', 'AUR62005790' => 'cqu', 'AUR62008419' => 'cqu', 'AUR62011819' => 'cqu', 'AUR62014138' => 'cqu', 'AUR62021676' => 'cqu', 'AUR62023210' => 'cqu', 'AUR62023256' => 'cqu', 'AUR62023797' => 'cqu', 'AUR62024663' => 'cqu', 'AUR62028771' => 'cqu', 'AUR62041245' => 'cqu', 'BcaB01g00908' => 'bca', 'BcaB01g02081' => 'bca', 'BcaB02g08020' => 'bca', 'BcaB02g09649' => 'bca', 'BcaB02g10694' => 'bca', 'BcaB03g13508' => 'bca', 'BcaB03g15766' => 'bca', 'BcaB07g29838' => 'bca', 'BcaB07g30411' => 'bca', 'BcaB08g34382' => 'bca', 'BcaC01g01806' => 'bca', 'BcaC01g02281' => 'bca', 'BcaC01g02472' => 'bca', 'BcaC03g17019' => 'bca', 'BcaC03g18150' => 'bca', 'BcaC04g24033' => 'bca', 'BcaC05g25319' => 'bca', 'BcaC06g31209' => 'bca', 'BcaC06g31320' => 'bca', 'BcaC06g34028' => 'bca', 'BcaC06g34199' => 'bca', 'BcaC06g34204' => 'bca', 'BcaC07g41581' => 'bca', 'BcaC08g44355' => 'bca', 'BolC2t11017H' => 'bol', 'BolC2t12277H' => 'bol', 'BolC3t15634H' => 'bol', 'BolC3t18697H' => 'bol', 'BolC3t18981H' => 'bol', 'BolC3t19463H' => 'bol', 'BolC5t28914H' => 'bol', 'BolC5t29956H' => 'bol', 'BolC6t36995H' => 'bol', 'BolC7t43710H' => 'bol', 'BolC7t43868H' => 'bol', 'BolC8t46814H' => 'bol', 'BolC8t52135H' => 'bol', 'BolC9t53097H' => 'bol', 'BraA02t08195Z' => 'bra', 'BraA02t09161Z' => 'bra', 'BraA06t24206Z' => 'bra', 'BraA06t25095Z' => 'bra', 'BraA06t25664Z' => 'bra', 'BraA06t25866Z' => 'bra', 'BraA06t27222Z' => 'bra', 'BraA06t27326Z' => 'bra', 'BraA07t29661Z' => 'bra', 'BraA08t35660Z' => 'bra', 'BraA09t35813Z' => 'bra', 'BraA09t41591Z' => 'bra', 'BraA10t42410Z' => 'bra', 'C02p49300' => 'bna', 'C02p62190' => 'bna', 'C03p33080' => 'bna', 'C03p64420' => 'bna', 'C03p67070' => 'bna', 'C03p71730' => 'bna', 'C05p01320' => 'bna', 'C05p12010' => 'bna', 'C06p17980' => 'bna', 'C07p31710' => 'bna', 'C07p33590' => 'bna', 'C08p00120' => 'bna', 'C08p45820' => 'bna', 'C09p01640' => 'bna', 'CAN.G1335.6' => 'can', 'CAN.G1693.9' => 'can', 'CAN.G359.6' => 'can', 'CAN.G38.8' => 'can', 'CAN.G625.70' => 'can', 'CAN.G625.71' => 'can', 'CAN.G628.3' => 'can', 'CAN.G653.14' => 'can', 'CAN.G777.7' => 'can', 'CAN.G837.19' => 'can', 'CANSAT01G0907' => 'cansat', 'CANSAT01G2396' => 'cansat', 'CANSAT25G1144' => 'cansat', 'CANSAT64G2282' => 'cansat', 'CARHR001900' => 'chi', 'CARHR014680' => 'chi', 'CARHR143810' => 'chi', 'CARHR145360' => 'chi', 'CARHR156180' => 'chi', 'CARHR214670' => 'chi', 'CARHR249600' => 'chi', 'CARHR276250' => 'chi', 'Carub.0001s0165' => 'cru', 'Carub.0001s1394' => 'cru', 'Carub.0005s0026' => 'cru', 'Carub.0005s0184' => 'cru', 'Carub.0005s1236' => 'cru', 'Carub.0005s1363' => 'cru', 'Carub.0006s3515' => 'cru', 'Carub.0008s2313' => 'cru', 'Ca_04795_v3' => 'car', 'Ca_08103_v3' => 'car', 'Ca_09206_v3' => 'car', 'Ca_10288_v3' => 'car', 'Ca_11102_v3' => 'car', 'Ca_22900_v3' => 'car', 'CBR_g4103' => 'cbr', 'Cc00_g23100' => 'ccan', 'Cc01_g21350' => 'ccan', 'Cc03_g14080' => 'ccan', 'Cc07_g08330' => 'ccan', 'Cc11_g09060' => 'ccan', 'Cc11_g13000' => 'ccan', 'CDE01G0338' => 'cde', 'CDE01G0661' => 'cde', 'CDE02G0941' => 'cde', 'CDE02G1680' => 'cde', 'CDE02G2436' => 'cde', 'CDE02G4395' => 'cde', 'CDE05G1045' => 'cde', 'CDE06G0975' => 'cde', 'CDE06G2683' => 'cde', 'CDE07G2044' => 'cde', 'CDE08G0483' => 'cde', 'CDE09G0902' => 'cde', 'CDE09G1098' => 'cde', 'CDE11G0068' => 'cde', 'Cfa005810' => 'cfa', 'Cfa008575' => 'cfa', 'Cfa018941' => 'cfa', 'Ciclev10012424m.g' => 'ccl', 'Ciclev10012730m.g' => 'ccl', 'Ciclev10016251m.g' => 'ccl', 'Ciclev10021492m.g' => 'ccl', 'Ciclev10021736m.g' => 'ccl', 'Ciclev10021987m.g' => 'ccl', 'Ciclev10032323m.g' => 'ccl', 'CiPaw.03G066600' => 'cil', 'CiPaw.04G045300' => 'cil', 'CiPaw.05G135000' => 'cil', 'CiPaw.05G247200' => 'cil', 'CiPaw.06G013700' => 'cil', 'CiPaw.06G085200' => 'cil', 'CiPaw.06G085400' => 'cil', 'CiPaw.07G116700' => 'cil', 'CiPaw.08G090400' => 'cil', 'CiPaw.11G044700' => 'cil', 'CiPaw.12G013200' => 'cil', 'ClCG01G006180' => 'cla', 'ClCG04G012230' => 'cla', 'ClCG05G010750' => 'cla', 'ClCG05G024280' => 'cla', 'ClCG10G011360' => 'cla', 'ClCG11G007350' => 'cla', 'COL.COLO4_08143' => 'col', 'COL.COLO4_09291' => 'col', 'COL.COLO4_20447' => 'col', 'COL.COLO4_23016' => 'col', 'COL.COLO4_23241' => 'col', 'COL.COLO4_27132' => 'col', 'COL.COLO4_27944' => 'col', 'COL.COLO4_33308' => 'col', 'Cpa.g.sc111.9' => 'cpa', 'Cpa.g.sc1131.1' => 'cpa', 'Cpa.g.sc116.8' => 'cpa', 'Cpa.g.sc128.25' => 'cpa', 'Cpa.g.sc18.33' => 'cpa', 'Cpa.g.sc65.110' => 'cpa', 'Cre09.g400738' => 'cre', 'Cre17.g747747' => 'cre', 'CsaV3_1G005520' => 'csa', 'CsaV3_2G010640' => 'csa', 'CsaV3_3G017780' => 'csa', 'CsaV3_4G001190' => 'csa', 'CsaV3_5G028480' => 'csa', 'CsaV3_5G032680' => 'csa', 'CSS0001249' => 'camsi', 'CSS0006825' => 'camsi', 'CSS0007034' => 'camsi', 'CSS0008186' => 'camsi', 'CSS0013375' => 'camsi', 'CSS0013602' => 'camsi', 'CSS0013863' => 'camsi', 'CSS0013869' => 'camsi', 'CSS0016142' => 'camsi', 'CSS0019021' => 'camsi', 'CSS0024244' => 'camsi', 'CSS0028440' => 'camsi', 'CSS0031626' => 'camsi', 'CSS0033385' => 'camsi', 'CSS0035309' => 'camsi', 'CSS0038889' => 'camsi', 'CSS0041018' => 'camsi', 'CSS0046954' => 'camsi', 'CSS0048312' => 'camsi', 'CSS0049542' => 'camsi', 'DCAR_005764' => 'dca', 'DCAR_007152' => 'dca', 'DCAR_016438' => 'dca', 'DCAR_016557' => 'dca', 'DCAR_026762' => 'dca', 'DCAR_027415' => 'dca', 'DCAR_029817' => 'dca', 'DCAR_030205' => 'dca', 'DCAR_031023' => 'dca', 'Dinv05884' => 'din', 'Dinv07058' => 'din', 'Dinv09245' => 'din', 'Dinv10088' => 'din', 'Dinv16192' => 'din', 'Dinv19963' => 'din', 'Dinv33111' => 'din', 'Dinv33203' => 'din', 'Dinv33983' => 'din', 'Dinv34154' => 'din', 'Dinv38713' => 'din', 'Duzib068G1252' => 'dzi', 'Duzib084G0238' => 'dzi', 'Duzib133G0075' => 'dzi', 'Duzib133G0314' => 'dzi', 'Duzib138G0428' => 'dzi', 'Duzib138G1146' => 'dzi', 'Duzib147G1486' => 'dzi', 'Duzib151G1021' => 'dzi', 'Duzib205G1270' => 'dzi', 'Duzib211G0193' => 'dzi', 'Duzib212G0898' => 'dzi', 'Duzib248G1097' => 'dzi', 'Duzib251G0073' => 'dzi', 'Duzib251G0706' => 'dzi', 'Duzib268G1471' => 'dzi', 'ECA232G0339' => 'eca', 'ECA232G4081' => 'eca', 'ECA233G4941' => 'eca', 'ECA236G1170' => 'eca', 'ECA246G0378' => 'eca', 'ECA246G2097' => 'eca', 'ECA246G3027' => 'eca', 'ECA247G0526' => 'eca', 'EL10Ac2g04511' => 'bvu', 'EL10Ac3g06084' => 'bvu', 'EL10Ac3g07156' => 'bvu', 'EL10Ac5g11019' => 'bvu', 'EL10Ac5g11020' => 'bvu', 'EL10Ac6g13207' => 'bvu', 'EL10Ac6g14245' => 'bvu', 'EL10Ac9g21085' => 'bvu', 'EL10As5g23520' => 'bvu', 'Eucgr.B00505' => 'egr', 'Eucgr.B00506' => 'egr', 'Eucgr.B03447' => 'egr', 'Eucgr.C00071' => 'egr', 'Eucgr.G02211' => 'egr', 'Eucgr.H01050' => 'egr', 'Eucgr.J01539' => 'egr', 'Eucgr.L00001' => 'egr', 'FAN02G3846' => 'fan', 'FAN04G0189' => 'fan', 'FAN04G0822' => 'fan', 'FAN05G0273' => 'fan', 'FAN07G1892' => 'fan', 'FAN07G2772' => 'fan', 'FAN08G1001' => 'fan', 'FAN08G1098' => 'fan', 'FAN08G3388' => 'fan', 'FAN09G3628' => 'fan', 'FAN12G1916' => 'fan', 'FAN12G2757' => 'fan', 'FAN13G1704' => 'fan', 'FAN13G2581' => 'fan', 'FAN13G2712' => 'fan', 'FAN14G2950' => 'fan', 'FAN14G3683' => 'fan', 'FAN17G1748' => 'fan', 'FAN18G0386' => 'fan', 'FAN18G2626' => 'fan', 'FAN22G0695' => 'fan', 'FAN22G2196' => 'fan', 'FvH4_4g15710' => 'fve', 'FvH4_4g31340' => 'fve', 'FvH4_4g32130' => 'fve', 'FvH4_5g14930' => 'fve', 'FvH4_5g39400' => 'fve', 'FvH4_6g48470' => 'fve', 'Glyma.01G047700' => 'gma', 'Glyma.02G013000' => 'gma', 'Glyma.02G090900' => 'gma', 'Glyma.02G107500' => 'gma', 'Glyma.02G137300' => 'gma', 'Glyma.03G219000' => 'gma', 'Glyma.04G169300' => 'gma', 'Glyma.05G091701' => 'gma', 'Glyma.06G194100' => 'gma', 'Glyma.07G208100' => 'gma', 'Glyma.07G230100' => 'gma', 'Glyma.09G250001' => 'gma', 'Glyma.10G013600' => 'gma', 'Glyma.10G265800' => 'gma', 'Glyma.18G242400' => 'gma', 'Glyma.18G292200' => 'gma', 'Glyma.19G215900' => 'gma', 'Glyma.20G036400' => 'gma', 'Glyma.20G124800' => 'gma', 'Gohir.A01G153800' => 'ghi', 'Gohir.A03G101100' => 'ghi', 'Gohir.A03G123500' => 'ghi', 'Gohir.A07G075500' => 'ghi', 'Gohir.A07G175600' => 'ghi', 'Gohir.A10G143400' => 'ghi', 'Gohir.A11G031241' => 'ghi', 'Gohir.A11G031421' => 'ghi', 'Gohir.A11G109600' => 'ghi', 'Gohir.A12G125300' => 'ghi', 'Gohir.A12G165000' => 'ghi', 'Gohir.A12G177600' => 'ghi', 'Gohir.A13G074700' => 'ghi', 'Gohir.D01G100200' => 'ghi', 'Gohir.D02G125900' => 'ghi', 'Gohir.D02G146100' => 'ghi', 'Gohir.D07G080000' => 'ghi', 'Gohir.D07G182600' => 'ghi', 'Gohir.D10G123500' => 'ghi', 'Gohir.D11G034600' => 'ghi', 'Gohir.D11G034900' => 'ghi', 'Gohir.D11G115000' => 'ghi', 'Gohir.D12G129000' => 'ghi', 'Gohir.D12G168100' => 'ghi', 'Gohir.D12G180000' => 'ghi', 'Gohir.D13G074900' => 'ghi', 'Gorai.001G084900' => 'gra', 'Gorai.001G203200' => 'gra', 'Gorai.002G181200' => 'gra', 'Gorai.005G141600' => 'gra', 'Gorai.005G163500' => 'gra', 'Gorai.007G037500' => 'gra', 'Gorai.007G123200' => 'gra', 'Gorai.008G140100' => 'gra', 'Gorai.008G181000' => 'gra', 'Gorai.008G193100' => 'gra', 'Gorai.011G136400' => 'gra', 'Gorai.013G085600' => 'gra', 'GSVIVG01008001001' => 'vvi', 'GSVIVG01011789001' => 'vvi', 'GSVIVG01019978001' => 'vvi', 'GSVIVG01028110001' => 'vvi', 'GSVIVG01030910001' => 'vvi', 'GSVIVG01032601001' => 'vvi', 'GSVIVG01032602001' => 'vvi', 'GSVIVG01038141001' => 'vvi', 'HanXRQChr01g0000801' => 'han', 'HanXRQChr01g0013891' => 'han', 'HanXRQChr02g0038931' => 'han', 'HanXRQChr05g0133071' => 'han', 'HanXRQChr05g0156001' => 'han', 'HanXRQChr06g0168211' => 'han', 'HanXRQChr08g0212871' => 'han', 'HanXRQChr08g0236551' => 'han', 'HanXRQChr09g0262401' => 'han', 'HanXRQChr12g0380751' => 'han', 'HanXRQChr14g0440431' => 'han', 'HanXRQChr15g0464151' => 'han', 'HanXRQChr15g0477361' => 'han', 'HanXRQChr15g0484581' => 'han', 'HanXRQChr17g0545501' => 'han', 'HanXRQChr17g0570781' => 'han', 'Haze_05031' => 'cav', 'Haze_07325' => 'cav', 'Haze_11038' => 'cav', 'Haze_12010' => 'cav', 'Haze_14205' => 'cav', 'Hma1.2p1_0114F.1_g055220' => 'hma', 'Hma1.2p1_0150F.1_g066820' => 'hma', 'Hma1.2p1_0265F.1_g106790' => 'hma', 'Hma1.2p1_0486F.1_g163160' => 'hma', 'Hma1.2p1_0500F.1_g166930' => 'hma', 'Hma1.2p1_0735F.1_g210700' => 'hma', 'Hma1.2p1_0795F.1_g218840' => 'hma', 'HPP92_002028' => 'vpl', 'HPP92_003726' => 'vpl', 'HPP92_004916' => 'vpl', 'HPP92_005396' => 'vpl', 'HPP92_011248' => 'vpl', 'HPP92_016796' => 'vpl', 'HPP92_016828' => 'vpl', 'HPP92_024098' => 'vpl', 'Hund02559' => 'sun', 'Hund02649' => 'sun', 'Hund02937' => 'sun', 'Hund03200' => 'sun', 'Hund05878' => 'sun', 'Hund09626' => 'sun', 'Hund16192' => 'sun', 'Hund20689' => 'sun', 'Hund25234' => 'sun', 'Lalb_Chr02g0145551' => 'lal', 'Lalb_Chr02g0146791' => 'lal', 'Lalb_Chr04g0256041' => 'lal', 'Lalb_Chr05g0220341' => 'lal', 'Lalb_Chr09g0329261' => 'lal', 'Lalb_Chr10g0091521' => 'lal', 'Lalb_Chr10g0091561' => 'lal', 'Lalb_Chr10g0092931' => 'lal', 'Lalb_Chr10g0098281' => 'lal', 'Lalb_Chr15g0078221' => 'lal', 'Lalb_Chr15g0078231' => 'lal', 'Lalb_Chr16g0384451' => 'lal', 'Lalb_Chr17g0340671' => 'lal', 'Lalb_Chr18g0046741' => 'lal', 'Lalb_Chr21g0308521' => 'lal', 'Lalb_Chr21g0309551' => 'lal', 'Lj1A18T25' => 'lonja', 'Lj1g0006144' => 'lja', 'Lj1g0012133' => 'lja', 'Lj1g0018114' => 'lja', 'Lj1g0023043' => 'lja', 'Lj2A437G31' => 'lonja', 'Lj2g0010702' => 'lja', 'Lj3A876T41' => 'lonja', 'Lj4A180T58' => 'lonja', 'Lj5A110G120' => 'lonja', 'Lj5A110T124' => 'lonja', 'Lj5g0026978' => 'lja', 'Lj5g0027995' => 'lja', 'Lj6A167G15' => 'lonja', 'Lj6A749G48' => 'lonja', 'Lj6C173T10' => 'lonja', 'Lj6C787T8' => 'lonja', 'Lj6P167T14' => 'lonja', 'Lj9A464T87' => 'lonja', 'Lsat_1_v5_gn_1_12921' => 'lsa', 'Lsat_1_v5_gn_3_52340' => 'lsa', 'Lsat_1_v5_gn_3_54160' => 'lsa', 'Lsat_1_v5_gn_4_155240' => 'lsa', 'Lsat_1_v5_gn_4_9820' => 'lsa', 'Lsat_1_v5_gn_5_19621' => 'lsa', 'Lsat_1_v5_gn_8_115601' => 'lsa', 'Lsat_1_v5_gn_8_165821' => 'lsa', 'Lsat_1_v5_gn_8_42780' => 'lsa', 'Lsat_1_v5_gn_9_61500' => 'lsa', 'Manes.01G185400' => 'mes', 'Manes.01G227100' => 'mes', 'Manes.02G073300' => 'mes', 'Manes.04G035900' => 'mes', 'Manes.05G002900' => 'mes', 'Manes.05G101500' => 'mes', 'Manes.06G062000' => 'mes', 'Manes.06G092200' => 'mes', 'Manes.14G078200' => 'mes', 'Manes.14G135700' => 'mes', 'Manes.15G154550' => 'mes', 'Manes.15G176652' => 'mes', 'Mapoly0079s0072' => 'mpo', 'MBI02_g08836_MAGBIO' => 'mbi', 'MBI05_g29536_MAGBIO' => 'mbi', 'MBI05_g45847_MAGBIO' => 'mbi', 'MBI08_g25564_MAGBIO' => 'mbi', 'MBI10_g37694_MAGBIO' => 'mbi', 'MBI14_g07747_MAGBIO' => 'mbi', 'MBI16_g21186_MAGBIO' => 'mbi', 'MBI18_g31666_MAGBIO' => 'mbi', 'MBI19_g17400_MAGBIO' => 'mbi', 'MBI19_g27529_MAGBIO' => 'mbi', 'MBI19_g33853_MAGBIO' => 'mbi', 'MBI19_g46781_MAGBIO' => 'mbi', 'MCO05G378' => 'mco', 'MCO09G767' => 'mco', 'MD03G1296100' => 'mdo', 'MD06G1193400' => 'mdo', 'MD09G1051400' => 'mdo', 'MD09G1259600' => 'mdo', 'MD11G1315500' => 'mdo', 'MD13G1028300' => 'mdo', 'MD13G1072100' => 'mdo', 'MD14G1200500' => 'mdo', 'MD16G1031200' => 'mdo', 'MD16G1072700' => 'mdo', 'MD17G1041600' => 'mdo', 'Medtr1g087150' => 'mtr', 'Medtr1g108490' => 'mtr', 'Medtr3g053370' => 'mtr', 'Medtr5g040650' => 'mtr', 'Medtr7g010610' => 'mtr', 'Medtr7g082950' => 'mtr', 'Medtr7g109460' => 'mtr', 'Medtr8g467220' => 'mtr', 'MELO3C001985.2' => 'cme', 'MELO3C005309.2' => 'cme', 'MELO3C008547.2' => 'cme', 'MELO3C012095.2' => 'cme', 'MELO3C017920.2' => 'cme', 'MELO3C020316.2' => 'cme', 'Migut.D00087' => 'egut', 'Migut.E00087' => 'egut', 'Migut.E00404' => 'egut', 'Migut.E00405' => 'egut', 'Migut.H00257' => 'egut', 'Migut.L00482' => 'egut', 'Migut.L01292' => 'egut', 'Migut.N03068' => 'egut', 'MSTRG.13423' => 'ama', 'MSTRG.13571' => 'ama', 'MSTRG.18107' => 'ama', 'MSTRG.21682' => 'ama', 'MSTRG.2192' => 'ama', 'MSTRG.22030' => 'ama', 'MSTRG.2341' => 'ama', 'MSTRG.23606' => 'ama', 'MSTRG.700' => 'ama', 'MSTRG.7800' => 'ama', 'Nitab4.5_0000122g0060' => 'nta', 'Nitab4.5_0000141g0100' => 'nta', 'Nitab4.5_0000145g0060' => 'nta', 'Nitab4.5_0000414g0080' => 'nta', 'Nitab4.5_0000889g0060' => 'nta', 'Nitab4.5_0001128g0130' => 'nta', 'Nitab4.5_0001301g0070' => 'nta', 'Nitab4.5_0001544g0110' => 'nta', 'Nitab4.5_0001648g0060' => 'nta', 'Nitab4.5_0002456g0190' => 'nta', 'Nitab4.5_0002635g0070' => 'nta', 'Nitab4.5_0003598g0040' => 'nta', 'Nitab4.5_0004092g0050' => 'nta', 'Nitab4.5_0004661g0080' => 'nta', 'Nitab4.5_0004692g0020' => 'nta', 'Nitab4.5_0005587g0110' => 'nta', 'Nitab4.5_0006000g0110' => 'nta', 'Nitab4.5_0007189g0020' => 'nta', 'Nitab4.5_0008044g0040' => 'nta', 'Nitab4.5_0008811g0010' => 'nta', 'Nitab4.5_0011015g0020' => 'nta', 'Nn1g09636' => 'nnu', 'Nn1g09649' => 'nnu', 'Nn3g17243' => 'nnu', 'Nn3g18034' => 'nnu', 'Nn3g21674' => 'nnu', 'Nn4g23164' => 'nnu', 'Nn4g23169' => 'nnu', 'Nn4g24061' => 'nnu', 'Nn4g24452' => 'nnu', 'Nn4g25616' => 'nnu', 'Oeu002101.1' => 'oeu', 'Oeu004308.2' => 'oeu', 'Oeu006871.1' => 'oeu', 'Oeu007714.1' => 'oeu', 'Oeu008470.1' => 'oeu', 'Oeu014032.1' => 'oeu', 'Oeu022758.1' => 'oeu', 'Oeu044329.1' => 'oeu', 'Oeu047296.2' => 'oeu', 'Oeu047392.1' => 'oeu', 'Oeu047427.1' => 'oeu', 'Oeu050339.1' => 'oeu', 'Oeu054875.1' => 'oeu', 'Os01g0121200' => 'osa', 'Os01g0303600' => 'osa', 'Os01g0686700' => 'osa', 'Os01g0894600' => 'osa', 'Os02g0577100' => 'osa', 'Os05g0355300' => 'osa', 'Os05g0552400' => 'osa', 'Os08g0436200' => 'osa', 'Os09g0413000' => 'osa', 'Os11g0600700' => 'osa', 'Peaxi162Scf00013g00341' => 'pax', 'Peaxi162Scf00058g02710' => 'pax', 'Peaxi162Scf00075g01419' => 'pax', 'Peaxi162Scf00119g01526' => 'pax', 'Peaxi162Scf00205g00619' => 'pax', 'Peaxi162Scf00222g00823' => 'pax', 'Peaxi162Scf00274g00626' => 'pax', 'Peaxi162Scf00274g00627' => 'pax', 'Peaxi162Scf00691g00017' => 'pax', 'Peaxi162Scf00803g00315' => 'pax', 'Peaxi162Scf00911g00316' => 'pax', 'Peaxi162Scf01256g00225' => 'pax', 'PGR042G1353' => 'pgr', 'PGR042G3311' => 'pgr', 'PGR044G1492' => 'pgr', 'PGR083G0801' => 'pgr', 'PGR102G2380' => 'pgr', 'PGR119G0154' => 'pgr', 'PGR119G1221' => 'pgr', 'PGSC0003DMG400005991' => 'stu', 'PGSC0003DMG400009007' => 'stu', 'PGSC0003DMG400014618' => 'stu', 'PGSC0003DMG400018414' => 'stu', 'PGSC0003DMG400019512' => 'stu', 'PGSC0003DMG400030557' => 'stu', 'PGSC0003DMG400030638' => 'stu', 'PGSC0003DMG400033082' => 'stu', 'PGSC0003DMG400046305' => 'stu', 'PGSC0003DMG402006561' => 'stu', 'Phvul.001G212400' => 'pvu', 'Phvul.002G085200' => 'pvu', 'Phvul.002G170900' => 'pvu', 'Phvul.007G036000' => 'pvu', 'Phvul.008G009800' => 'pvu', 'Phvul.009G187100' => 'pvu', 'Phvul.L001629' => 'pvu', 'Potri.002G196600' => 'ptr', 'Potri.004G093500' => 'ptr', 'Potri.008G086300' => 'ptr', 'Potri.008G127400' => 'ptr', 'Potri.010G115600' => 'ptr', 'Potri.010G169200' => 'ptr', 'Potri.013G126600' => 'ptr', 'Potri.014G121900' => 'ptr', 'Potri.017G122300' => 'ptr', 'Potri.019G111700' => 'ptr', 'Prupe.1G274900' => 'ppe', 'Prupe.1G321900' => 'ppe', 'Prupe.3G151200' => 'ppe', 'Prupe.3G267400' => 'ppe', 'Prupe.5G193700' => 'ppe', 'Prupe.8G271200' => 'ppe', 'Psat0s3603g0040' => 'psa', 'Psat2g119880' => 'psa', 'Psat3g020040' => 'psa', 'Psat3g096520' => 'psa', 'Psat4g131440' => 'psa', 'Psat5g140480' => 'psa', 'Psat6g161880' => 'psa', 'Psat6g222320' => 'psa', 'PSO013G0070' => 'pso', 'PSO017G2728' => 'pso', 'PSO170G2628' => 'pso', 'PSO210G0257' => 'pso', 'PSO357G0687' => 'pso', 'PSO478G4145' => 'pso', 'PSO675G4718' => 'pso', 'PSO732G0414' => 'pso', 'PSO832G1671' => 'pso', 'PSO832G4037' => 'pso', 'QL01p002306' => 'qlo', 'QL02p049083' => 'qlo', 'QL03p063896' => 'qlo', 'QL10p017026' => 'qlo', 'QL12p020105' => 'qlo', 'RcHm_v2.0_Chr2g0133281' => 'rch', 'RcHm_v2.0_Chr2g0133341' => 'rch', 'RcHm_v2.0_Chr3g0493641' => 'rch', 'RcHm_v2.0_Chr4g0402751' => 'rch', 'RcHm_v2.0_Chr4g0439841' => 'rch', 'RcHm_v2.0_Chr4g0440831' => 'rch', 'RcHm_v2.0_Chr5g0079951' => 'rch', 'RcHm_v2.0_Chr7g0181451' => 'rch', 'RcHm_v2.0_Chr7g0241671' => 'rch', 'Rhsim01G0290200' => 'rsi', 'Rhsim08G0084600' => 'rsi', 'Rhsim08G0154800' => 'rsi', 'Rhsim09G0010500' => 'rsi', 'Rhsim09G0068500' => 'rsi', 'Rhsim12G0156200' => 'rsi', 'Rhsim13G0122500' => 'rsi', 'Sabra02G0160600' => 'sbr', 'Sabra04G0062600' => 'sbr', 'Sabra08G0064100' => 'sbr', 'Sabra08G0096200' => 'sbr', 'Sabra10G0085500' => 'sbr', 'Sabra10G0087200' => 'sbr', 'Sabra10G0128900' => 'sbr', 'Sabra13G0105700' => 'sbr', 'Sabra14G0090300' => 'sbr', 'Sabra17G0101100' => 'sbr', 'Sabra17G0103700' => 'sbr', 'Sabra19G0107800' => 'sbr', 'SalBow2G1210' => 'sbo', 'SalBow2G3069' => 'sbo', 'SalBow3G2204' => 'sbo', 'SalBow3G2415' => 'sbo', 'SalBow3G3315' => 'sbo', 'SalBow6G1419' => 'sbo', 'SalBow8G1660' => 'sbo', 'Sc04g0002650' => 'sci', 'Sc04g0008120' => 'sci', 'Sc11g0004070' => 'sci', 'Sc15g0002470' => 'sci', 'Sc17g0000500' => 'sci', 'Sc24g0003230' => 'sci', 'Sc25g0002810' => 'sci', 'Sed0002094' => 'sed', 'Sed0011492' => 'sed', 'Sed0011815' => 'sed', 'Sed0013891' => 'sed', 'Sed0017972' => 'sed', 'Sed0019063' => 'sed', 'Sed0020561' => 'sed', 'Sed0020702' => 'sed', 'Sed0026346' => 'sed', 'Sed0027104' => 'sed', 'SEGI_09250' => 'sgi', 'SEGI_35293' => 'sgi', 'SEGI_39058' => 'sgi', 'SGA_v2.0_scaffold12G06186' => 'sas', 'SGA_v2.0_scaffold14G06930' => 'sas', 'SGA_v2.0_scaffold170G38825' => 'sas', 'SGA_v2.0_scaffold302G47815' => 'sas', 'SGA_v2.0_scaffold334G49064' => 'sas', 'SGA_v2.0_scaffold376G50282' => 'sas', 'SGA_v2.0_scaffold389G50561' => 'sas', 'SGA_v2.0_scaffold49G18132' => 'sas', 'SGA_v2.0_scaffold53G19351' => 'sas', 'SGA_v2.0_scaffold63G21651' => 'sas', 'SMO196G0083' => 'smo', 'SMO196G0282' => 'smo', 'SMO218G0001' => 'smo', 'SMO274G0057' => 'smo', 'SMO347G0529' => 'smo', 'SMO353G0006' => 'smo', 'Solyc01g010880.3' => 'sly', 'Solyc01g079530.4' => 'sly', 'Solyc02g091230.4' => 'sly', 'Solyc03g116030.4' => 'sly', 'Solyc04g007600.4' => 'sly', 'Solyc05g007660.2' => 'sly', 'Solyc05g008390.3' => 'sly', 'Solyc06g069780.4' => 'sly', 'Solyc07g021400.1' => 'sly', 'Solyc08g014080.4' => 'sly', 'Solyc12g062710.1' => 'sly', 'Sopen01g006700' => 'spe', 'Sopen01g031300' => 'spe', 'Sopen02g035850' => 'spe', 'Sopen03g035020' => 'spe', 'Sopen04g002680' => 'spe', 'Sopen05g003540' => 'spe', 'Sopen05g004220' => 'spe', 'Sopen06g027070' => 'spe', 'Sopen08g004980' => 'spe', 'Sp1g01610' => 'spa', 'Sp1g12610' => 'spa', 'Sp2g12740' => 'spa', 'Sp2g14000' => 'spa', 'Sp2g25640' => 'spa', 'Sp5g14330' => 'spa', 'Sp6g01960' => 'spa', 'Sp7g04010' => 'spa', 'TAR362G0516' => 'tar', 'TAR365G0713' => 'tar', 'TAR371G1289' => 'tar', 'TAR374G0631' => 'tar', 'TAR374G1382' => 'tar', 'TAR622G0383' => 'tar', 'TAR622G0633' => 'tar', 'TAR629G1384' => 'tar', 'TAR629G1543' => 'tar', 'TAR633G1555' => 'tar', 'TAR633G1770' => 'tar', 'TAR636G0930' => 'tar', 'THA.LOC104801569' => 'tha', 'THA.LOC104808720' => 'tha', 'THA.LOC104818257' => 'tha', 'THA.LOC104821422' => 'tha', 'THA.LOC104822125' => 'tha', 'THA.LOC104822461' => 'tha', 'THA.LOC104823916' => 'tha', 'THA.LOC104824079' => 'tha', 'THA.LOC104825940' => 'tha', 'Thecc.01G312400' => 'tca', 'Thecc.02G278100' => 'tca', 'Thecc.02G346000' => 'tca', 'Thecc.03G087700' => 'tca', 'Thecc.04G082100' => 'tca', 'Thecc.04G124600' => 'tca', 'Thecc.04G165800' => 'tca', 'Thhalv10001001m.g' => 'esa', 'Thhalv10004664m.g' => 'esa', 'Thhalv10004698m.g' => 'esa', 'Thhalv10008459m.g' => 'esa', 'Thhalv10008710m.g' => 'esa', 'Thhalv10010967m.g' => 'esa', 'Thhalv10027893m.g' => 'esa', 'Thhalv10028096m.g' => 'esa', 'Thhalv10029217m.g' => 'esa', 'TPR.G19774' => 'tpr', 'TPR.G28548' => 'tpr', 'TPR.G33589' => 'tpr', 'TPR.G39179' => 'tpr', 'TPR.G39343' => 'tpr', 'TPR.G4028' => 'tpr', 'TPR.G4822' => 'tpr', 'TWI18G0799' => 'twi', 'TWI53G1055' => 'twi', 'TWI60G0555' => 'twi', 'TWI79G0217' => 'twi', 'TWI81G0744' => 'twi', 'unitig_22.g5550' => 'ugi', 'unitig_22.g6518' => 'ugi', 'unitig_26.g10302' => 'ugi', 'unitig_27.g25174' => 'ugi', 'unitig_29.g31875' => 'ugi', 'unitig_62.g23728' => 'ugi', 'unitig_699.g19472' => 'ugi', 'unitig_699.g19531' => 'ugi', 'unitig_736.g22351' => 'ugi', 'unitig_749.g13228' => 'ugi', 'unitig_8.g3196' => 'ugi', 'vmacro00702' => 'vma', 'vmacro01430' => 'vma', 'vmacro02408' => 'vma', 'vmacro05493' => 'vma', 'vmacro16546' => 'vma', 'vmacro17541' => 'vma', 'vmacro18060' => 'vma', 'VMungo0251G2985' => 'vmu', 'VMungo0251G3303' => 'vmu', 'VMungo0720G0474' => 'vmu', 'VMungo0720G1903' => 'vmu', 'VMungo1215G0601' => 'vmu', 'VMungo1309G2709' => 'vmu', 'VMungo1383G0099' => 'vmu', 'VMungo1383G1339' => 'vmu', 'VMungo1383G2572' => 'vmu', 'Zm00001eb099600' => 'zma', 'Zm00001eb130210' => 'zma', 'Zm00001eb144890' => 'zma', 'Zm00001eb148200' => 'zma', 'Zm00001eb167370' => 'zma', 'Zm00001eb183100' => 'zma', 'Zm00001eb244960' => 'zma', 'Zm00001eb261730' => 'zma', 'Zm00001eb286060' => 'zma', 'Zm00001eb295020' => 'zma', 'Zm00001eb334850' => 'zma', 'Zm00001eb340290' => 'zma', 'Zm00001eb347470' => 'zma', 'Zm00001eb360530' => 'zma', 'Zm00001eb365790' => 'zma' ) $gf_id = 'HOM05D000618' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000618' ) $data_identifier = 'HOM05D000618' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 12, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 21, 'nnu' => (int) 10, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 12, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 6, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 5, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1